1. L. Domanski, T. Bednarz, T. Gureyev, L. Murray, B. E. Huang, Ya. I. Nesterets, D. Thompson, E. Jones, C. Cavanagh, D. Wang, P. Vallotton, C. Sun, N. Margvelashvili, A. Khassapov, A. Stevenson, S. Mayo, M. Morell, A. W. George, and J. A. Taylor. Applications of Heterogeneous Computing in Computational and Simulation Science. International Journal of Computational Science and Engineering, 2013.
   Note: To appear. [bibtex-entry]


2. P. Vallotton and S. Olivier. Embedded tri-track: free software for large scale particle tracking. Microscopy and Microanalysis, 2013.
   Note: To appear. [bibtex-entry]


3. J. Newman, E. E. Bolton, J. Müller-Dieckmann, V. J. Fazio, D. T. Gallagher, D. Lovell, J. R. Luft, T. S. Peat, D. Ratcliffe, R. A. Sayle, E. H. Snell, K. Taylor, P. Vallotton, S. Velanker, and F. von Delft. On the need for an international effort to capture, share and use crystallization screening data. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 68(3):253--258, March 2012. [bibtex-entry]


4. M. H. Abreu, R. Lyons, W. Hughes, K. Mele, P. Vallotton, and R. Daly. Gab2 regulates cytoskeletal organization and migration of mammary epithelial cells by modulating RhoA activation. Molecular Biology of the Cell, 22(1):105--116, January 2011. [bibtex-entry]


5. L. Domanski, C. Sun, R. Lagerstrom, D. Wang, L. Bischof, M. Payne, and P. Vallotton. High Throughput Detection of Linear Features: Selected Applications in Biological Imaging. In G. Dougherty, editor, Medical Image Processing: Techniques and Applications, chapter 8, pages 167--191. Springer, 2011. [DOI] [bibtex-entry]


6. P. Vallotton, C. Sun, D. Lovell, M. Savelsbergh, M. Payne, and G. Muench. Identifying weak linear features with the 'Coalescing Shortest Path Image Transform'. Microscopy and Microanalysis, 17(6):911--914, December 2011. [DOI] [bibtex-entry]


7. J. G. Burchfield, J. A. Lopez, K. Mele, P. Vallotton, and W. E. Hughes. Exocytotic Vesicle Behaviour Assessed by Total Internal Reflection Fluorescence Microscopy. Traffic, 11(4):429--439, April 2010. [DOI] [bibtex-entry]


8. P. Vallotton, C. Sun, D. Lovell, V. J. Fazio, and J. Newman. DroplIT, An Improved Image Analysis Method for Droplet Identification in High-Throughput Crystallization Trials. Journal of Applied Crystallography, 43(6):1548--1552, December 2010. [DOI] [bibtex-entry]


9. D. Wang, R. Lagerstrom, C. Sun, L. Bischof, P. Vallotton, and M. Götte. HCA-Vision: Automated Neurite Outgrowth Analysis. Journal of Biomolecular Screening, 15(9):1165--1170, October 2010. [DOI] [bibtex-entry]


10. J. A. Lopez, J. G. Burchfield, D. H. Blair, K. Mele, Y. Ng, P. Vallotton, D. E. James, and W. E. Hughes. Identification of a Distal GLUT4 Trafficking Event Controlled by Actin Polymerisation. Molecular Biology of the Cell, 20(17):3918--3929, September 2009. [bibtex-entry]


11. K. Mele, J. G. Burchfield, D. E. James, W. E. Hughes, and P. Vallotton. Towards fully automated Identification of Vesicle-Membrane Fusion Events in TIRF Microscopy. IJCAET Special Issue on Engineering and Computational Technologies in the Life Sciences, 1(4):502--515, 2009. [bibtex-entry]


12. C. Sun, P. Vallotton, D. Wang, J. Lopez, Y. Ng, and D. James. Membrane Boundary Extraction Using Circular Multiple Paths. Pattern Recognition, 42(4):523--530, April 2009. [DOI] [bibtex-entry]


13. C. Sun and P. Vallotton. Fast Linear Feature Detection Using Multiple Directional Non-Maximum Suppression. Journal of Microscopy, 234(2):147--157, May 2009. [DOI] [bibtex-entry]


14. P. Vallotton, A. Phatak, and M. Berman. Spectral Imaging and Unmixing. In Ewa Goldys, editor,Fluorescence Applications in Biotechnology and Life Sciences, pages 117--139. Wiley, 2009. [bibtex-entry]


15. P. Vallotton and J. V. Small. Shifting views on the leading role of the lamellipodium in cell migration: Speckle tracking revisited. Journal of Cell Science, 122(12):1955--1958, June 2009. [bibtex-entry]


16. R. Lagerstrom, C. Sun, and P. Vallotton. Boundary Extraction of Linear Features Using Dual Paths through Gradient Profiles. Pattern Recognition Letters, 29(12):1753--1757, September 2008. [DOI] [bibtex-entry]


17. P. Vallotton and N. Thomas. Automated body hair counting and length measurement. Skin Research and Technology, 14(4):493--497, November 2008. [bibtex-entry]


18. P. Vallotton. Differential Aberration Correction (DAC) Microscopy: a New Molecular Ruler. Journal of Microscopy, 232(2):235--239, November 2008. [bibtex-entry]


19. A.C.J. Timmers, P. Vallotton, C. Heym, and D. Menzel. Microtubule Dynamics in Root Hairs of Medicago Truncatula. European Journal of Cell Biology, 86(2):69--83, February 2007. [bibtex-entry]


20. P. Vallotton, R. Lagerstrom, C. Sun, M. Buckley, D. Wang, M. De Silva, S.-S. Tan, and J. Gunnersen. Automated Analysis of Neurite Branching in Cultured Cortical Neurons Using HCA-Vision. Cytometry, Part A, 71A(10):889--895, October 2007. [DOI] [bibtex-entry]

1. C. Zhang, C. Sun, R. Davey, R. Su, L. Bischof, P. Vallotton, D. Lovell, S. Hope, S. Lehnert, and T. D. Pham. Tubule Detection in Testis Images Using Boundary Weighting and Circular Shortest Path. In IEEE Engineering in Medicine and Biology Society Conference, Osaka, Japan, 3-7 July 2013.
   Note: To appear. [bibtex-entry]


2. P. Vallotton, M. Payne, T. Bednarz, L. Domanski, D. James, W. Hughes, and C. Sun. Automating the Quantification of Membrane Proteins under Confocal Microscopy. In International Symposium on Biomedical Imaging, Barcelona, Spain, pages 776--779, 2-5 May 2012. [bibtex-entry]


3. L. Domanski, T. Bednarz, P. Vallotton, and J. Taylor. Heterogeneous parallel 3D image deconvolution on a cluster of GPUs and CPUs. In 19th International Congress on Modelling and Simulation, pages 613--619, December 2011. Modelling and Simulation Society of Australia and New Zealand. [WWW] [bibtex-entry]


4. P. Vallotton, D. Lovell, and J. Newman. An observation about circular shortest paths - Dealing with additional constraints using Branch and Bound. In Digital Image Computing: Techniques and Applications, Noosa, Australia, pages 513--517, 6-8 December 2011. [DOI] [bibtex-entry]


5. Y. Arzhaeva, P. Vallotton, and C. Sun. Mosaicing of microscope images in the presence of large areas with insufficient information content. In SPIE Symposium on Medical Imaging, volume 7623, San Diego, California, pages 762338, 13-18 February 2010. [DOI] [bibtex-entry]


6. L. Domanski, C. Sun, R. Hassan, P. Vallotton, and D. Wang. Linear Feature Detection on GPUs. In Digital Image Computing: Techniques and Applications, Sydney, pages 649--656, 1-3 December 2010. [DOI] [bibtex-entry]


7. M. Gedda and P. Vallotton. Three-dimensional Tracing of Neurites in Fluorescence Microscopy Images using Local Path-finding. In International Conference on Acoustics, Speech, and Signal Processing, Dallas, 14-19 March 2010. [bibtex-entry]


8. C. Sun, P. Vallotton, M. Fenech, and P. Thomas. Automated Nucleoplasmic Bridge Detection for DNA Damage Scoring in Binucleated Cells. In Proceedings of International Conference on Pattern Recognition, Istanbul, Turkey, pages 2480--2483, 23-26 August 2010. [DOI] [bibtex-entry]


9. P. Vallotton, L. Mililli, L. Turnbull, and C. Whitchurch. Segmentation of Dense 2D Bacilli Populations. In Digital Image Computing: Techniques and Applications, Sydney, pages 82--86, 1-3 December 2010. [DOI] [bibtex-entry]


10. D. Wang and P. Vallotton. Improved Marker-Controlled Watershed Segmentation with Local Boundary Priors. In Proceedings of Image and Vision Computing New Zealand, Queenstown, New Zealand, 8-9 November 2010. [bibtex-entry]


11. C. Zhang, C. Sun, T. D. Pham, P. Vallotton, and M. Fenech. Detection of Nuclear Buds Based on Ellipse Fitting. In Digital Image Computing: Techniques and Applications, Sydney, pages 178--183, 1-3 December 2010. [DOI] [bibtex-entry]


12. L. Domanski, P. Vallotton, and D. Wang. Two and Three-Dimensional Image Deconvolution on Graphics Hardware. In Proceedings of the 18th World IMACS/MODSIM Congress, Cairns, Australia, pages 1010--1016, 13-17 July 2009. [WWW] [bibtex-entry]


13. K. Mele, A. Coster, J. G. Burchfield, J. Lopez, D. E. James, W. E. Hughes, and P. Vallotton. Automatic Identification of Fusion Events in TIRF Microscopy Image Sequences. In ICCV09 1st Workshop on Video-oriented Object and Event Classification (VOEC'09), Kyoto, Japan, pages 578--584, 28 September 2009. [bibtex-entry]


14. P. Vallotton, C. Sun, D. Wang, P. Ranganathan, L. Turnbull, and C. Whitchurch. Segmentation and tracking of individual Pseudomonas aeruginosa bacteria in dense populations of motile cells. In Image and Vision Computing New Zealand, Wellington, New Zealand, pages 221--225, 23-25 November 2009. [bibtex-entry]


15. D. Wang, D. Bourke, L. Domanski, and P. Vallotton. Multicore-based high performance image analysis for batch processing in drug discovery. In Proceedings of the 18th World IMACS/MODSIM Congress, Cairns, pages 1080--1086, 13-17 July 2009. [bibtex-entry]


16. W. Yu, H. K. Lee, S. Hariharan, S. Shvetha, P. Vallotton, and S. Ahmed. Segmentation of Neural Stem/Progenitor Cells Nuclei within 3-D Neurospheres. In Proceedings of the 5th International Symposium on Advances in Visual Computing: Part I, Las Vegas, Nevada, USA, pages 531--543, November 30 - December 2 2009. [bibtex-entry]


17. S. Hadjidemetriou, B. Gabrielli, T. Pike, F. Stevens, K. Mele, and P. Vallotton. Detection and Tracking of Cell Divisions in Phase Contrast Video Microscopy. In The Third International Workshop on Microscopic Image Analysis with Applications in Biology, New York, 5-6 September 2008. [WWW] [bibtex-entry]


18. C. Sun, P. Vallotton, D. Wang, Jamie Lopez, Yvonne Ng, and David James. Membrane Boundary Extraction Using a Circular Shortest Path Technique. In Tuan D. Pham and Xiaobo Zhou, editors, in Proceedings of International Symposium on Computational Models for Life Sciences, Gold Coast, Queensland, Australia, pages 41--47, 17-19 December 2007. [bibtex-entry]


19. C. Sun and P. Vallotton. Priority-based Path Growing for Linear Feature Detection. In Proceedings of Digital Image Computing: Techniques and Applications, Adelaide, pages 360--365, 3-5 December 2007. [bibtex-entry]


20. P. Vallotton, David E. James, and William E. Hughes. Towards fully automated Identification of Vesicle-Membrane Fusion Events in TIRF Microscopy. In Tuan D. Pham and Xiaobo Zhou, editors, in Proceedings of International Symposium on Computational Models for Life Sciences, Gold Coast, Queensland, Australia, pages 3--10, 17-19 December 2007. [bibtex-entry]


21. M. Berman, A. Phatak, and P. Vallotton. Hyperspectaral image analysis: some applications in biotechnology and their prospective solutions. In Proc. MICCAI Workshop on Biophotonics Imaging for Diagnosis and Treatment, Copenhagen, Denmark, pages 1--6, 2006.
    Note: Invited. [bibtex-entry]


22. C. Sun and P. Vallotton. Fast Linear Feature Detection Using Multiple Directional Non-Maximum Suppression. In Proceedings of International Conference on Pattern Recognition, volume 2, Hong Kong, pages 288--291, 20-24 August 2006. IEEE. [bibtex-entry]

1. K. Mele, J. G. Burchfield, D. E. James J. Lopez, W. E. Hughes, A. Coster, and P. Vallotton. TIRF Microscopy Software for Automated Vesicle Fusion Detection. American Biotechnology Laboratory, 27(10):8-9, October 2009. [bibtex-entry]


2. P. Vallotton, C. Sun, and D. Wang. HCA-Vision puts neuron images under a virtual scalpel. Innovation, 7(1):38--39, 2007. [WWW] [bibtex-entry]


3. L. Bischof, M.J. Buckley, R. Lagerstrom, C. Sun, H. Talbot, D. Wang, and P. Vallotton. Image Analysis of Neurite Branching: High-Content Screening at High Speed. American Biotechnology Laboratory, 23(10):22, September 2005. [WWW] [bibtex-entry]

This document was translated from BibT_EX by bibtex2html

© Copyright 2013, CSIRO Australia
Use of this web site and information available from
it is subject to our Legal Notice and Disclaimer and Privacy Statement